nginx – Mouflons and Penguins

Installing Wiki.js on Ubuntu 16.04

Theodotos Andreou — Sat, 10 Jun 2017 07:52:41 +0000

Wiki.js is an elegant looking wiki based on Markdown. It supports LDAP and many more authentication mechanisms. In this guide we describe how to install Wiki.js on Ubuntu 16.04.

Prerequisites

An Ubuntu 16.04 instance.

Install curl, Node.js v8.x and build-essential:

# apt -y install curl
# curl -sL https://deb.nodesource.com/setup_8.x | bash -
# apt -y install nodejs build-essential

Install MongoDB v3.4

# apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv 0C49F3730359A14518585931BC711F9BA15703C6
# echo "deb [ arch=amd64,arm64 ] http://repo.mongodb.org/apt/ubuntu xenial/mongodb-org/3.4 multiverse" | tee /etc/apt/sources.list.d/mongodb-org-3.4.list
# apt update
# apt -y install mongodb-org

Start MongoDB:

# systemctl start mongodb

Enable MongoDB at startup:

# systemctl enable mongodb

Install git

The version that comes with Ubuntu 16.04 fills the minimum requirements so there is no need to install it from upstream.

# apt -y install git

Install Wiki.js

# mkdir /srv/wiki.js
# cd /srv/wiki.js
# npm install wiki.js@latest

You will get this message:

> Browse to http://your-server:3000/ to configure your wiki! (Replaced your-server with the hostname or IP of your server!)
▐   ⠂    ▌ I'll wait until you're done ;)

Do as the message says. Let the wizard wait until we are done, and open another shell to work with.

Setup nginx

Install Nginx:

# apt -y install nginx

Create this VirtualHost configuration (/etc/nginx/sites-available/wiki.example.com.conf):

server {
    listen      [::]:80 ipv6only=off;
    server_name wiki.example.com;
    return      301 https://$server_name$request_uri;
}
server {
    listen 443 ssl http2;
    listen [::]:443 ssl http2;
    server_name  wiki.example.com;

    ssl_session_timeout 1d;
    ssl_session_cache shared:SSL:50m;
    ssl_session_tickets off;

    ssl_protocols TLSv1 TLSv1.1 TLSv1.2;
    ssl_ciphers "EECDH+ECDSA+AESGCM EECDH+aRSA+AESGCM EECDH+ECDSA+SHA384 EECDH+ECDSA+SHA256 EECDH+aRSA+SHA384 EECDH+aRSA+SHA256 EECDH EDH+aRSA !RC4 !aNULL !eNULL !LOW !3DES !MD5 !EXP !PSK !SRP !DSS";
    ssl_prefer_server_ciphers on;

    ssl_certificate /etc/nginx/ssl/wiki.example.com.crt;
    ssl_certificate_key /etc/nginx/ssl/wiki.example.com.key;
    ssl_trusted_certificate /etc/nginx/ssl/CA.crt;

    location / {
        proxy_set_header Host $http_host;
        proxy_set_header X-Real-IP $remote_addr;
        proxy_pass http://127.0.0.1:3000;
        proxy_http_version 1.1;
        proxy_set_header Upgrade $http_upgrade;
        proxy_set_header Connection "upgrade";
        proxy_next_upstream error timeout http_502 http_503 http_504;
    }
}

Enable the wiki.example.com VirtualHost:

# cd /etc/nginx/sites-enabled/
# ln -s ../sites-available/wiki.example.com.conf
# unlink default

Restart Nginx:

# systemctl restart nginx

Configure Wiki.js

After the installation you will be asked if you wish to run the configuration wizard. Select this and continue:

Yes, run configuration wizard on port 3000 (recommended)

Now browse to http://wiki.example.com/ and follow the installation wizard:

Welcome!: Start
System Check (if all good): Continue
General:
- Site title: ExampleWiki
- Host: https://wiki.example.com
- Port: 3000
- Site UI Language: English
- Public Access: Not selected
- Press: Continue
Important Considerations: Continue
Database: mongodb://localhost:27017/wiki
Database Check: Continue:
Paths:
- Local Data Path: ./data
- Local Repository Path: ./repo
Git Repository: Skip this step
Git Repository Check: Continue
Administrator Account
- Administrator Email: admin@example.com
- Password: MySecretCombination
- ConfirmPassword: MySecretCombination
Finalizing: Start

Enable Wiki.js on startup

# npm install -g pm2
# pm2 startup
# pm2 save

Setup LDAP

This is an optional step for those wishing to integrate Wiki.js in their LDAP infrastructure.

Trust CUT IST ISSUING CA

Connect to the LDAP (AD) server and get all certificates:

openssl s_client -showcerts -connect dcs03ist00.lim.tepak.int:636 | tee ldap.log

Hit ‘Ctrl-C’ to end the command.

The certificate with the ID ‘1’ in ldap.log is the ISSUING CA certificate. Extract the CUT IST ISSUING CA certificate and save it in cut_issuing_ca.crt:

Verify the certificate with:

openssl x509 -text -in cut_issuing_ca.crt

Add the CUT ISSUING CA in the trusted chain of the system:

cp cut_issuing_ca.crt /usr/local/share/ca-certificates/
update-ca-certificates

Configure LDAP for Wiki.js

Make these changes in /srv/wiki.js/config.yml:

  ldap:
    enabled: true
    url: 'ldap://ldap.example.com:389'
    bindDn: 'cn=wiki,ou=dsa,dc=example,dc=com'
    bindCredentials: 'MyLDAPCredentials'
    searchBase: 'ou=people,dc=example,dc=com'
    searchFilter: '(uid={{username}})'
    tlsEnabled: true
    tlsCertPath: '/etc/ssl/certs/ca-certificates.crt'

Give Access permissions to authenticated users

Visit the Admin URL:

https://wiki.example.com/admin

Click on ‘Users’. You will get a list of users. You can give ‘Read and Write’ access to them from the ‘Access Rights’ field and you can upgrade them to ‘Global Administrators’ from the ‘Role Override’ field.

NOTE: For LDAP the users need to login first before they are allowed to write.

Enjoy your newly created Wiki!

References

https://docs.requarks.io/wiki
https://nodejs.org/en/download/package-manager/#debian-and-ubuntu-based-linux-distributions
https://docs.mongodb.com/manual/tutorial/install-mongodb-on-ubuntu/

Installing a Simple ORCID Authentication Node

Theodotos Andreou — Wed, 27 Apr 2016 11:55:39 +0000

These are the instructions for installing an ORCID¹ authentication node. We will be using the simple-orcid-auth-node² developed by the ORCID organization.

Assumptions

An Ubuntu 16.04 server machine but works on 14.04x with some minor changes.
A FQDN, let’s say orcid.example.com.
Server IP is 10.2.2.2 in our case.
Create an orcid user: sudo useradd -r -m -d /var/www/html/orcid orcid.
For Ubuntu 14.04 it is better to use /var/www/orcid instead of /var/www/html/orcid.
Also use service servicename restart on 14.04.x instead of systemctl restart service.

Installing simple-orcid-auth-node

Install necessary packages (as a privileged user):
```
$ sudo apt -y install nginx nodejs npm
```
NOTE: If you are using Ubuntu 14.04.x do not install the node package. This package is completely unrelated with nodejs.__³

Download and extract simple-orcid-auth-node (as the orcid user):

sudo su - orcid
wget https://github.com/rcpeters/simple-orcid-auth-node/archive/master.tar.gz
tar xvzf master.tar.gz

Install the application:

$ cd simple-orcid-auth-node-master/
$ npm install

Test run the application (as the orcid user):
```
$ nodejs client-app.js
server started on 8000
```
Looks OK. Now point your Hit CTRL^C and move on.

NOTE: If you prefer using the legacy node client-app.js invocation, you need to install the nodejs-legacy package as well.

Setting ORCID as an autostart service

Autostart using systemd⁴ (Ubuntu 16.04):

Create the /etc/systemd/system/orcid.service service definition (as the root user):

$ cat > /etc/systemd/system/orcid.service < < EOF
[Service]
ExecStart=/usr/bin/nodejs /var/www/html/orcid/simple-orcid-auth-node-master/client-app.js
WorkingDirectory=/var/www/html/orcid/simple-orcid-auth-node-master
Restart=always
StandardOutput=syslog
StandardError=syslog
SyslogIdentifier=orcid
User=orcid
Group=orcid
Environment=NODE_ENV=production
[Install]
WantedBy=multi-user.target
EOF

Reload systemd and start the service:

$ sudo systemctl daemon-reload
$ sudo systemctl start orcid.service

Verify that the service is started:

$ sudo systemctl status orcid.service
● orcid.service
Loaded: loaded (/etc/systemd/system/orcid.service; disabled; vendor preset: enabled)
Active: active (running) since Wed 2016-04-27 09:00:16 UTC; 37s ago
Main PID: 11141 (nodejs)
Tasks: 5 (limit: 512)
Memory: 24.1M
CPU: 268ms
CGroup: /system.slice/orcid.service
   └─11141 /usr/bin/nodejs /var/www/html/orcid/simple-orcid-auth-node-master/client-app.js
Apr 27 09:00:16 orcid systemd[1]: Started orcid.service.
Apr 27 09:00:16 orcid orcid[11141]: server started on 8000

Autostart using sysv-init (Ubuntu 14.04.x):

Prepare a sysv-init startup script or use mine for convinience:

$ cd /etc/init.d
$ wget https://raw.githubusercontent.com/theodotos/arena/master/orcid
$ chmod +x orcid
$ update-rc.d orcid enable
$ update-rc.d orcid defaults

Now orcid should be able to autostart after a reboot.

Setting up nginx

Prepare this configuration:

$ cat > /etc/nginx/sites-available/orcid < < EOF
server {
    listen 80;
    listen [::]:80 ipv6only=on;
    server_name orcid.example.com;
    access_log  /var/log/nginx/orcid.access.log;
    error_log /var/log/nginx/orcid.error.log;
    location / {
        proxy_pass http://localhost:8000/;
        proxy_set_header Host \$host;
        proxy_set_header X-Forwarded-For \$proxy_add_x_forwarded_for;
    }
}
EOF

Enable the orcid site:

$ cd /etc/nginx/sites-enabled/
$ sudo ln -s /etc/nginx/sites-available/orcid

Uncomment the following line in /etc/nginx/nginx.conf⁵:
```
    server_names_hash_bucket_size 64;
```
Restart nginx:
```
$ sudo systemctl restart nginx.service
```
Verify nginx with sudo systemctl status nginx.service

Now you can visit the http://orcid.example.com site and test your setup

Going to production

The default simple-orcid-auth-node is using the sandbox ORCID service which is ideal for testing. This is how the configuration file (helpers/config.js) looks like:

module.exports = config = {
  // Config for OAuth2 
  CLIENT_ID: 'APP-O9TUKAPVLALU1SOJ',
  CLIENT_SECRET: '0eafb938-020e-45a6-a148-3c222171d9d8',
  AUTHORIZE_URI: 'https://sandbox.orcid.org/oauth/authorize',
  TOKEN_EXCHANGE_URI: 'https://api.sandbox.orcid.org/oauth/token',
  CODE_CALLBACK_URI: 'http://localhost:8000/authorization-code-callback',
  // General server config
  PORT: '8000',
  SERVER_IP: '127.0.0.1',
}
...

This setup will not work in production. You have to modify the CLIENT_ID and CLIENT_SECRET variables with your own credentials and change the AUTHORIZE_URI and TOKEN_EXCHANGE_URI to point to the production ORCID services:

module.exports = config = {
  // Config for OAuth2 
  CLIENT_ID: 'APP-HSGSHJS335353GSGSG',
  CLIENT_SECRET: '56d4eb21-6622-8483-3422-f53f3fs53sfs35f',
  AUTHORIZE_URI: 'https://orcid.org/oauth/authorize',
  TOKEN_EXCHANGE_URI: 'https://api.orcid.org/oauth/token',
  CODE_CALLBACK_URI: 'http://localhost:8000/authorization-code-callback',
  // General server config
  PORT: '8000',
  SERVER_IP: '127.0.0.1',
}
...

Restart nginx and orcid when done:

$ sudo systemctl restart nginx.service orcid.service

References

https://en.wikipedia.org/wiki/ORCID ↩︎
https://github.com/ORCID/simple-orcid-auth-node ↩︎
https://github.com/ORCID/simple-orcid-auth-node/issues/3 ↩︎
https://www.digitalocean.com/community/tutorials/how-to-deploy-node-js-applications-using-systemd-and-nginx ↩︎
http://charles.lescampeurs.org/2008/11/14/fix-nginx-increase-server_names_hash_bucket_size ↩︎